CTCFBSDB: a CTCF binding site database for characterization of vertebrate genomic insulators
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Species Name
Chromosome Location 5' Flanking Gene 3' Flanking Gene
Validation Method
In Situ Function
Description
Sequence Reference

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ID Species Name Chromosome Location 5' Flanking Gene 3' Flanking Gene Validation Method In Situ Function Description Reference

Human GTL2-a chr14:100364027-100364047 DLK1 FP504 sequence analysis   imprinting 11076856

Human GTL2-b chr14:100364319-100364339 DLK1 FP504 sequence analysis   imprinting 11076856

Human apoB CTCF chr2:21174437-21174468 APOB   in vitro binding
enhancer-blocking assay
chromatin boundary   11389587

Human DM1 site 1 chr19:50965398-50965458 SIX5 DMPK in vitro binding
in vivo binding
enhancer-blocking CTG/CAG repeats
methylation-sensitive
11479593

Human DM1 site 2 chr19:50965141-50965201 SIX5 DMPK in vitro binding
in vivo binding
enhancer-blocking CTG/CAG repeats
methylation-sensitive
11479593

Human PLK promoter site chr16:23597358-23597397 DCTN5 PLK1 in vitro binding     11782357

Human human beta-globin 5'HS5 chr11:5269210-5269281 HBE1 HBG2 in vitro binding
enhancer-blocking assay
enhancer-blocking   11997516

Human human beta-globin 3'HS1 chr11:5182745-5182816 OR51V1 HBB in vitro binding
enhancer-blocking assay
enhancer-blocking   11997516

Human hPCT12 chr11:1947003-1947086 MRPL23 AK126380 in vitro binding imprinting boundary imprinting 12075007

Human hPCT14 chr11:1944457-1944540 MRPL23 AK126380 in vitro binding imprinting boundary imprinting 12075007